PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H03872.3.p
Common NameEUGRSUZ_H03872
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 226aa    MW: 24127.4 Da    PI: 5.6757
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H03872.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.94.1e-095984227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      + + C +++rtG+C yG+ C+++H++
  Eucgr.H03872.3.p 59 GVADCLHYLRTGYCGYGAGCRYNHPR 84
                      7899********************96 PP

2zf-CCCH38.42e-12181206227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C +++rtG+C yG+rC+F+H++
  Eucgr.H03872.3.p 181 DEADCVYYLRTGYCGYGARCRFNHPR 206
                       6789********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.2355785IPR000571Zinc finger, CCCH-type
SMARTSM003560.00155784IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-75984IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-66186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-46384IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5179206IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22179207IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9181206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-7182208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-6185206IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNGYAGAHEG SGSDSSPERR DDSGADTGLE APMWQLGLGR DGGGGGGGES GPAYPERPGV  60
ADCLHYLRTG YCGYGAGCRY NHPRDRSTVV GVTRAGGAEY PERAGQPTHR LGLLERRLLF  120
VRPPVRTMNG YPGAQEGPRL NPLPEWPDDP RAETGLEEPM WQLGWGRGGG ESDPAYPERP  180
DEADCVYYLR TGYCGYGARC RFNHPRDRSA VVGATRAGGA VSQNE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H03872.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010024644.11e-129PREDICTED: zinc finger CCCH domain-containing protein 34-like
RefseqXP_010024645.11e-129PREDICTED: zinc finger CCCH domain-containing protein 34-like
RefseqXP_010024646.11e-129PREDICTED: zinc finger CCCH domain-containing protein 34-like
TrEMBLA0A059B4Z61e-160A0A059B4Z6_EUCGR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.12e-28C3H family protein